Proteome Discoverer Workshop - Processing DIA data with CHIMERYS intelligent search algorithm

Join this free Thermo Scientific Proteome Discoverer online workshop to learn about best practices for DIA data analysis with the help of the CHIMERYS intelligent search algorithm.

The workshop will briefly introduce CHIMERYS and then focus on CHIMERYS node parameter settings and practical tips demonstrated in the context of a step-by-step data processing example. We will also discuss the advantages of a novel data completeness mode introduced in PD 3.3 SP1 release.

Topics:

• Proteome Discoverer 3.3 SP1 release: What‘s new?
• CHIMERYS intelligent search algorithm: 
  • Introduction
  • What’s new in CHIMERYS 5?
  • Controlling the scoring depth
  • Novel approach to PTMs
  • Data completeness mode
• Step-by-step data processing with CHIMERYS
  • Training materials
  • Management of FASTA files
  • .RAW file review
  • Study and Study Factors
  • Workflow parameter settings
  • Results review
• Tips for efficient data processing

The workshop is aimed at both novice and intermediate users. We have allocated plenty of time to answer your questions.

Are you unable to attend the workshop broadcast on May 19? Please register anyway to automatically receive the link to the recording.

If you would like to practice DIA data processing with Proteome Discoverer software (which is not a requirement for the workshop), we are happy to share with you an example data set. Please contact: [email protected].

Note that Proteome Discoverer 3.x would be needed for such exercises. Moreover, you would need to have access to CHIMERYS (either Cloud version or locally on your ARDIA box). To obtain access to CHIMERYS Cloud on a trial basis: CHIMERYS trial

CHIMERYS is developed by MSAID, part of Thermo Fisher Scientific.

Presenter: Michaela Scigelova (Product Support, Thermo Fisher Scientific)

Michaela provides customer support to Thermo Scientific Proteome Discoverer software users.

Presenter: Martin Frejno (Sr. Manager Software Engineering & Managing Director, Thermo Fisher Scientific)

In his role as Chief Executive Officer at MSAID, Martin has been responsible for the long-term strategy and commercialization of MSAID's products. MSAID became part of Thermo Fisher Scientific in March 2026. Martin is based in Cologne, Germany